DIPPER

DIPPER (DIstance-based Phylogenetic PlacER) is a tool for ultrafast and ultralarge phylogenetic reconstruction on GPUs, designed to maintain high accuracy with a minimal memory footprint. DIPPER introduces several innovations, including a divide-and-conquer strategy, a new placement algorithm, and an on-the-fly distance calculator that dynamically enables selective distance computation. DIPPER consistently outperforms existing distance-based methods in speed, accuracy, and memory efficiency. In addition, DIPPER minimizes branch length underestimation for non-additive distance matrices compared to earlier methods and offers a strict mode that completely eliminates the underestimation.

homepage: https://turakhia.ucsd.edu/DIPPER/

version	toolchain
0.1.5	GCC/14.3.0

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