SQUID

Single-cell RNA Quantity Informed Deconvolution. SQUID is an R package for conducting (tumor) deconvolution analyses. SQUID executes a combination of RNA-Seq transformation and dampened weighted least-squares deconvolution to predict the composition of cell mixtures and tissue samples based on the concurrent RNA-Seq and scnRNA-Seq profiles. SQUID harnesses the power of concurrent RNA-Seq and scnRNA-Seq profiling, outperforming other methods in predicting the composition of cell mixtures and tissue samples.

homepage: https://github.com/favilaco/deconv_matching_bulk_scnRNA/tree/master/SQUID

version	versionsuffix	toolchain
1.0.0	-R-4.3.2	foss/2023a

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