oxDNA¶
oxDNA is a simulation code that was initially conceived as an implementation of the coarse-grained DNA model introduced by T. E. Ouldridge, J. P. K. Doye and A. A. Louis. It has been since reworked and it is now an extensible simulation+analysis framework. It natively supports DNA, RNA, Lennard-Jones and patchy particle simulations of different kinds on both single CPU cores and NVIDIA GPUs.
homepage: https://github.com/lorenzo-rovigatti/oxDNA
| version | versionsuffix | toolchain |
|---|---|---|
3.5.2 |
-CUDA-11.7.0 |
foss/2022a |
3.6.0 |
-CUDA-11.7.0 |
foss/2022a |
3.6.0 |
-CUDA-12.0.0 |
foss/2022b |
3.6.0 |
-CUDA-12.1.1 |
foss/2023a |
(quick links: (all) - 0 - a - b - c - d - e - f - g - h - i - j - k - l - m - n - o - p - q - r - s - t - u - v - w - x - y - z)