metaMDBG

MetaMDBG is a fast and low-memory assembler for long and accurate metagenomics reads (e.g. PacBio HiFi, Nanopore r10.4). It is based on the minimizer de-Bruijn graph (MDBG), which have been reimplemented specifically for metagenomics assembly. MetaMDBG combines an efficient multi-k approach in minimizer-space for dealing with uneven species coverages, and a novel abundance-based filtering method for simplifying strain complexity.

homepage: https://github.com/GaetanBenoitDev/metaMDBG/

version	toolchain
1.1	GCCcore/12.3.0

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