LDhelmet

LDhelmet is a software program for statistical inference of fine-scale crossover recombination rates from population genetic data. LDhelmet expects the input data to be phased and aligned DNA sequences. The statistical model assumes the sample of DNA sequences is randomly drawn from a single population, and that the population followed a neutral evolution with constant population size. However, the statistical inference can still be accurate even with mild deviations from these assumptions. LDhelmet can handle sample sizes of up to 50 individuals (haplotypes), and is suitable for whole-genome sequence analysis.

homepage: https://github.com/popgenmethods/LDhelmet

version	toolchain
1.10	GCC/14.2.0

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