GATK¶
The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
homepage: https://www.broadinstitute.org/gatk/
| version | versionsuffix | toolchain |
|---|---|---|
4.2.0.0 |
-Java-1.8 |
GCCcore/10.2.0 |
4.2.0.0 |
-Java-11 |
GCCcore/10.2.0 |
4.2.3.0 |
-Java-11 |
GCCcore/11.2.0 |
4.2.5.0 |
-Java-11 |
GCCcore/11.2.0 |
4.2.6.1 |
-Java-11 |
GCCcore/10.3.0 |
4.2.6.1 |
-Java-11 |
GCCcore/11.2.0 |
4.3.0.0 |
-Java-11 |
GCCcore/11.3.0 |
4.3.0.0 |
-Java-11 |
GCCcore/12.3.0 |
4.4.0.0 |
-Java-17 |
GCCcore/12.2.0 |
4.4.0.0 |
-Java-17 |
GCCcore/12.3.0 |
4.5.0.0 |
-Java-17 |
GCCcore/12.3.0 |
4.6.0.0 |
-Java-17 |
GCCcore/13.2.0 |
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