cellsnp-lite

Cellsnp-lite is a C/C++ tool for efficient genotyping bi-allelic SNPs on single cells. You can use cellsnp-lite after read alignment to obtain the snp x cell pileup UMI or read count matrices for each allele of given or detected SNPs.

homepage: https://cellsnp-lite.readthedocs.io/en/latest

version	toolchain
1.2.3	GCC/13.2.0

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