stpipeline¶
The ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format to generated datasets for down-stream analysis. The ST pipeline can also be used to process single cell data as long as a file with barcodes identifying each cell is provided. The ST Pipeline can also process RNA-Seq datasets generated with or without UMIs.
homepage: https://github.com/SpatialTranscriptomicsResearch/st_pipeline
| version | versionsuffix | toolchain |
|---|---|---|
1.7.3 |
-Python-2.7.15 |
foss/2018b |
1.7.6 |
-Python-3.7.2 |
foss/2019a |
1.7.6 |
-Python-3.7.4 |
foss/2019b |
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