stpipeline

The ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format to generated datasets for down-stream analysis. The ST pipeline can also be used to process single cell data as long as a file with barcodes identifying each cell is provided. The ST Pipeline can also process RNA-Seq datasets generated with or without UMIs.

homepage: https://github.com/SpatialTranscriptomicsResearch/st_pipeline

version	toolchain
1.8.1	foss/2022a

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