Stacks

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

homepage: http://creskolab.uoregon.edu/stacks/

version	toolchain
1.40	foss/2016a
1.42	foss/2016a
1.44	foss/2016a
1.45	foss/2016a
1.46	intel/2017a
1.47	foss/2016a
1.48	intel/2017b
1.48	intel/2018b
2.0	foss/2018a
2.0	intel/2018a
2.0Beta10a	foss/2018a
2.0Beta7c	intel/2017b
2.0Beta8c	intel/2017b
2.0Beta9	intel/2018a
2.2	foss/2018a
2.3b	foss/2018a
2.3e	foss/2018b
2.41	GCC/8.2.0-2.31.1
2.41	foss/2018b
2.41	iccifort/2019.1.144-GCC-8.2.0-2.31.1
2.5	iccifort/2019.5.281
2.53	foss/2019b
2.53	iccifort/2019.5.281
2.54	foss/2020a
2.62	foss/2022a

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