minimap2¶
Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.
homepage: https://github.com/lh3/minimap2
| version | toolchain |
|---|---|
2.0rc1 |
foss/2016b |
2.10 |
foss/2018a |
2.11 |
intel/2018a |
2.12 |
foss/2018a |
2.13 |
foss/2018b |
2.17 |
GCC/8.2.0-2.31.1 |
2.17 |
GCC/8.3.0 |
2.17 |
GCCcore/9.3.0 |
2.18 |
GCCcore/10.2.0 |
2.20 |
GCCcore/10.2.0 |
2.20 |
GCCcore/10.3.0 |
2.22 |
GCCcore/11.2.0 |
2.24 |
GCCcore/11.2.0 |
2.24 |
GCCcore/11.3.0 |
2.26 |
GCCcore/12.2.0 |
2.26 |
GCCcore/12.3.0 |
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