chewBBACA¶
chewBBACA stands for "BSR-Based Allele Calling Algorithm". chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.
homepage: https://github.com/B-UMMI/chewBBACA
| version | versionsuffix | toolchain |
|---|---|---|
2.5.5 |
-Python-3.8.2 |
intel/2020a |
3.3.9 |
foss/2022b |
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